STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C448_14123COG1125 ABC-type proline/glycine betaine transport systems, ATPase components. (337 aa)    
Predicted Functional Partners:
C448_14113
Glycine/betaine ABC transporter substrate-binding protein; COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein).
 0.999
C448_14118
COG1174 ABC-type proline/glycine betaine transport systems, permease component.
 0.997
C448_14128
COG1174 ABC-type proline/glycine betaine transport systems, permease component.
 0.997
C448_08849
COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component.
 
     
0.900
C448_13691
ABC transporter permease; COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
      0.900
C448_03701
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
      0.894
C448_04861
COG0555 ABC-type sulfate transport system, permease component.
 
     0.880
menB
Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily.
       0.419
Your Current Organism:
Halococcus morrhuae
NCBI taxonomy Id: 931277
Other names: H. morrhuae DSM 1307, Halococcus morrhuae DSM 1307, Halococcus morrhuae JCM 8876, Halococcus morrhuae NRC 16008
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.