SETBP1 protein (Notamacropus eugenii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SETBP1

SET binding protein 1. (1337 aa)

Predicted Functional Partners:

ENSMEUP00000010961

0.839

SUZ12

0.799

ASH2L

0.778

ENSMEUP00000006436

0.773

ENSMEUP00000012388

0.760

KDM6B

0.760

RBBP5

0.756

CAMKMT

0.733

GLYR1

0.725

ARID4A

0.715

Your Current Organism:

Notamacropus eugenii

NCBI taxonomy Id: 9315
Other names: Macropus eugenii, N. eugenii, tammar wallaby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID4A	ENSMEUP00000012388	ENSMEUP00000003362	ENSMEUP00000012388	AT-rich interaction domain 4A.	annotation not available	0.609
ARID4A	KDM6B	ENSMEUP00000003362	ENSMEUP00000014172	AT-rich interaction domain 4A.	Lysine demethylase 6B.	0.609
ARID4A	SETBP1	ENSMEUP00000003362	ENSMEUP00000001649	AT-rich interaction domain 4A.	SET binding protein 1.	0.715
ASH2L	ENSMEUP00000010961	ENSMEUP00000002351	ENSMEUP00000010961	ASH2 like, histone lysine methyltransferase complex subunit.	annotation not available	0.544
ASH2L	ENSMEUP00000012388	ENSMEUP00000002351	ENSMEUP00000012388	ASH2 like, histone lysine methyltransferase complex subunit.	annotation not available	0.986
ASH2L	KDM6B	ENSMEUP00000002351	ENSMEUP00000014172	ASH2 like, histone lysine methyltransferase complex subunit.	Lysine demethylase 6B.	0.986
ASH2L	RBBP5	ENSMEUP00000002351	ENSMEUP00000009850	ASH2 like, histone lysine methyltransferase complex subunit.	RB binding protein 5, histone lysine methyltransferase complex subunit.	0.999
ASH2L	SETBP1	ENSMEUP00000002351	ENSMEUP00000001649	ASH2 like, histone lysine methyltransferase complex subunit.	SET binding protein 1.	0.778
ASH2L	SUZ12	ENSMEUP00000002351	ENSMEUP00000014811	ASH2 like, histone lysine methyltransferase complex subunit.	SUZ12 polycomb repressive complex 2 subunit.	0.424
CAMKMT	ENSMEUP00000010961	ENSMEUP00000001408	ENSMEUP00000010961	Calmodulin-lysine N-methyltransferase.	annotation not available	0.830
CAMKMT	SETBP1	ENSMEUP00000001408	ENSMEUP00000001649	Calmodulin-lysine N-methyltransferase.	SET binding protein 1.	0.733
ENSMEUP00000006436	ENSMEUP00000012388	ENSMEUP00000006436	ENSMEUP00000012388	annotation not available	annotation not available	0.587
ENSMEUP00000006436	KDM6B	ENSMEUP00000006436	ENSMEUP00000014172	annotation not available	Lysine demethylase 6B.	0.587
ENSMEUP00000006436	SETBP1	ENSMEUP00000006436	ENSMEUP00000001649	annotation not available	SET binding protein 1.	0.773
ENSMEUP00000006436	SUZ12	ENSMEUP00000006436	ENSMEUP00000014811	annotation not available	SUZ12 polycomb repressive complex 2 subunit.	0.522
ENSMEUP00000010961	ASH2L	ENSMEUP00000010961	ENSMEUP00000002351	annotation not available	ASH2 like, histone lysine methyltransferase complex subunit.	0.544
ENSMEUP00000010961	CAMKMT	ENSMEUP00000010961	ENSMEUP00000001408	annotation not available	Calmodulin-lysine N-methyltransferase.	0.830
ENSMEUP00000010961	GLYR1	ENSMEUP00000010961	ENSMEUP00000010948	annotation not available	Glyoxylate reductase 1 homolog.	0.629
ENSMEUP00000010961	SETBP1	ENSMEUP00000010961	ENSMEUP00000001649	annotation not available	SET binding protein 1.	0.839
ENSMEUP00000012388	ARID4A	ENSMEUP00000012388	ENSMEUP00000003362	annotation not available	AT-rich interaction domain 4A.	0.609