Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MAP1LC3AMicrotubule associated protein 1 light chain 3 alpha. (89 aa)    
Predicted Functional Partners:
ENSMEUP00000011407
annotation not available
   
 0.992
ENSMEUP00000015157
annotation not available
   
 0.990
ATG4B
Autophagy related 4B cysteine peptidase.
   
 0.989
ATG7
Autophagy related 7.
   
 0.988
ATG3
Autophagy related 3.
   
 0.987
ATG4A
Autophagy related 4A cysteine peptidase.
   
 0.981
ENSMEUP00000011542
annotation not available
    
 0.976
GABARAPL2
GABA type A receptor associated protein like 2.
   
 0.974
OPTN
Optineurin.
   
 0.972
WDFY3
WD repeat and FYVE domain containing 3.
    
 0.966
Your Current Organism:
Notamacropus eugenii
NCBI taxonomy Id: 9315
Other names: Macropus eugenii, N. eugenii, tammar wallaby
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