RPAP1 protein (Notamacropus eugenii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RPAP1

RNA polymerase II associated protein 1. (1395 aa)

Predicted Functional Partners:

GPN2

0.899

GPN1

0.754

POLR2C

0.718

ENSMEUP00000008540

0.566

POLR1C

0.539

RPAP2

0.535

ENSMEUP00000011196

0.535

POLR2L

0.515

ENSMEUP00000012953

0.491

RUVBL1

0.434

Your Current Organism:

Notamacropus eugenii

NCBI taxonomy Id: 9315
Other names: Macropus eugenii, N. eugenii, tammar wallaby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMEUP00000008540	ENSMEUP00000011196	ENSMEUP00000008540	ENSMEUP00000011196	annotation not available	annotation not available	0.431
ENSMEUP00000008540	ENSMEUP00000012953	ENSMEUP00000008540	ENSMEUP00000012953	annotation not available	annotation not available	0.849
ENSMEUP00000008540	GPN1	ENSMEUP00000008540	ENSMEUP00000013796	annotation not available	GPN-loop GTPase 1.	0.973
ENSMEUP00000008540	GPN2	ENSMEUP00000008540	ENSMEUP00000002942	annotation not available	GPN-loop GTPase 2.	0.707
ENSMEUP00000008540	POLR1C	ENSMEUP00000008540	ENSMEUP00000006186	annotation not available	RNA polymerase I and III subunit C.	0.822
ENSMEUP00000008540	POLR2C	ENSMEUP00000008540	ENSMEUP00000013459	annotation not available	RNA polymerase II subunit C.	0.895
ENSMEUP00000008540	POLR2L	ENSMEUP00000008540	ENSMEUP00000003593	annotation not available	RNA polymerase II subunit L.	0.841
ENSMEUP00000008540	RPAP1	ENSMEUP00000008540	ENSMEUP00000002295	annotation not available	RNA polymerase II associated protein 1.	0.566
ENSMEUP00000008540	RPAP2	ENSMEUP00000008540	ENSMEUP00000007924	annotation not available	RNA polymerase II associated protein 2.	0.900
ENSMEUP00000011196	ENSMEUP00000008540	ENSMEUP00000011196	ENSMEUP00000008540	annotation not available	annotation not available	0.431
ENSMEUP00000011196	ENSMEUP00000012953	ENSMEUP00000011196	ENSMEUP00000012953	annotation not available	annotation not available	0.700
ENSMEUP00000011196	GPN1	ENSMEUP00000011196	ENSMEUP00000013796	annotation not available	GPN-loop GTPase 1.	0.581
ENSMEUP00000011196	GPN2	ENSMEUP00000011196	ENSMEUP00000002942	annotation not available	GPN-loop GTPase 2.	0.431
ENSMEUP00000011196	POLR1C	ENSMEUP00000011196	ENSMEUP00000006186	annotation not available	RNA polymerase I and III subunit C.	0.772
ENSMEUP00000011196	POLR2C	ENSMEUP00000011196	ENSMEUP00000013459	annotation not available	RNA polymerase II subunit C.	0.660
ENSMEUP00000011196	POLR2L	ENSMEUP00000011196	ENSMEUP00000003593	annotation not available	RNA polymerase II subunit L.	0.661
ENSMEUP00000011196	RPAP1	ENSMEUP00000011196	ENSMEUP00000002295	annotation not available	RNA polymerase II associated protein 1.	0.535
ENSMEUP00000011196	RPAP2	ENSMEUP00000011196	ENSMEUP00000007924	annotation not available	RNA polymerase II associated protein 2.	0.764
ENSMEUP00000011196	RUVBL1	ENSMEUP00000011196	ENSMEUP00000009029	annotation not available	RuvB like AAA ATPase 1.	0.995
ENSMEUP00000012953	ENSMEUP00000008540	ENSMEUP00000012953	ENSMEUP00000008540	annotation not available	annotation not available	0.849