USP24 protein (Notamacropus eugenii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

USP24

Ubiquitin specific peptidase 24. (2511 aa)

Predicted Functional Partners:

ITSN2

0.970

ENSMEUP00000008332

0.914

ENSMEUP00000013395

0.839

TRIP12

0.808

SMAD4

0.768

ENSMEUP00000006675

0.741

ENSMEUP00000007345

0.736

ENSMEUP00000011978

0.714

ENSMEUP00000008141

0.699

ENSMEUP00000000453

0.653

Your Current Organism:

Notamacropus eugenii

NCBI taxonomy Id: 9315
Other names: Macropus eugenii, N. eugenii, tammar wallaby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMEUP00000000453	ENSMEUP00000006675	ENSMEUP00000000453	ENSMEUP00000006675	annotation not available	annotation not available	0.446
ENSMEUP00000000453	ENSMEUP00000008141	ENSMEUP00000000453	ENSMEUP00000008141	annotation not available	annotation not available	0.538
ENSMEUP00000000453	ENSMEUP00000011978	ENSMEUP00000000453	ENSMEUP00000011978	annotation not available	annotation not available	0.424
ENSMEUP00000000453	SMAD4	ENSMEUP00000000453	ENSMEUP00000001667	annotation not available	SMAD family member 4.	0.893
ENSMEUP00000000453	USP24	ENSMEUP00000000453	ENSMEUP00000002563	annotation not available	Ubiquitin specific peptidase 24.	0.653
ENSMEUP00000006675	ENSMEUP00000000453	ENSMEUP00000006675	ENSMEUP00000000453	annotation not available	annotation not available	0.446
ENSMEUP00000006675	ENSMEUP00000008141	ENSMEUP00000006675	ENSMEUP00000008141	annotation not available	annotation not available	0.757
ENSMEUP00000006675	ENSMEUP00000013395	ENSMEUP00000006675	ENSMEUP00000013395	annotation not available	annotation not available	0.542
ENSMEUP00000006675	ITSN2	ENSMEUP00000006675	ENSMEUP00000005005	annotation not available	Intersectin 2.	0.721
ENSMEUP00000006675	SMAD4	ENSMEUP00000006675	ENSMEUP00000001667	annotation not available	SMAD family member 4.	0.469
ENSMEUP00000006675	USP24	ENSMEUP00000006675	ENSMEUP00000002563	annotation not available	Ubiquitin specific peptidase 24.	0.741
ENSMEUP00000007345	ENSMEUP00000008141	ENSMEUP00000007345	ENSMEUP00000008141	annotation not available	annotation not available	0.698
ENSMEUP00000007345	ENSMEUP00000011978	ENSMEUP00000007345	ENSMEUP00000011978	annotation not available	annotation not available	0.589
ENSMEUP00000007345	ENSMEUP00000013395	ENSMEUP00000007345	ENSMEUP00000013395	annotation not available	annotation not available	0.529
ENSMEUP00000007345	USP24	ENSMEUP00000007345	ENSMEUP00000002563	annotation not available	Ubiquitin specific peptidase 24.	0.736
ENSMEUP00000008141	ENSMEUP00000000453	ENSMEUP00000008141	ENSMEUP00000000453	annotation not available	annotation not available	0.538
ENSMEUP00000008141	ENSMEUP00000006675	ENSMEUP00000008141	ENSMEUP00000006675	annotation not available	annotation not available	0.757
ENSMEUP00000008141	ENSMEUP00000007345	ENSMEUP00000008141	ENSMEUP00000007345	annotation not available	annotation not available	0.698
ENSMEUP00000008141	ENSMEUP00000008332	ENSMEUP00000008141	ENSMEUP00000008332	annotation not available	annotation not available	0.749
ENSMEUP00000008141	ENSMEUP00000011978	ENSMEUP00000008141	ENSMEUP00000011978	annotation not available	annotation not available	0.952