LIN28B protein (Notamacropus eugenii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

LIN28B

Lin-28 homolog B. (244 aa)

Predicted Functional Partners:

SNRPD3

0.670

SNRPF

0.663

ENSMEUP00000004978

0.657

RPS11

0.653

DDX6

0.651

MRPL27

0.640

TUT4

0.635

ENSMEUP00000013931

0.631

ENSMEUP00000002155

0.628

DROSHA

0.626

Your Current Organism:

Notamacropus eugenii

NCBI taxonomy Id: 9315
Other names: Macropus eugenii, N. eugenii, tammar wallaby

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... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX6	DROSHA	ENSMEUP00000009627	ENSMEUP00000001884	DEAD-box helicase 6.	Drosha ribonuclease III.	0.597
DDX6	ENSMEUP00000002155	ENSMEUP00000009627	ENSMEUP00000002155	DEAD-box helicase 6.	annotation not available	0.441
DDX6	ENSMEUP00000004978	ENSMEUP00000009627	ENSMEUP00000004978	DEAD-box helicase 6.	annotation not available	0.639
DDX6	ENSMEUP00000013931	ENSMEUP00000009627	ENSMEUP00000013931	DEAD-box helicase 6.	annotation not available	0.648
DDX6	LIN28B	ENSMEUP00000009627	ENSMEUP00000002795	DEAD-box helicase 6.	Lin-28 homolog B.	0.651
DDX6	RPS11	ENSMEUP00000009627	ENSMEUP00000007891	DEAD-box helicase 6.	Ribosomal protein S11.	0.509
DDX6	SNRPD3	ENSMEUP00000009627	ENSMEUP00000003439	DEAD-box helicase 6.	Small nuclear ribonucleoprotein D3 polypeptide.	0.651
DDX6	SNRPF	ENSMEUP00000009627	ENSMEUP00000000618	DEAD-box helicase 6.	Small nuclear ribonucleoprotein polypeptide F.	0.674
DDX6	TUT4	ENSMEUP00000009627	ENSMEUP00000003543	DEAD-box helicase 6.	Terminal uridylyl transferase 4.	0.451
DROSHA	DDX6	ENSMEUP00000001884	ENSMEUP00000009627	Drosha ribonuclease III.	DEAD-box helicase 6.	0.597
DROSHA	ENSMEUP00000002155	ENSMEUP00000001884	ENSMEUP00000002155	Drosha ribonuclease III.	annotation not available	0.912
DROSHA	LIN28B	ENSMEUP00000001884	ENSMEUP00000002795	Drosha ribonuclease III.	Lin-28 homolog B.	0.626
DROSHA	MRPL27	ENSMEUP00000001884	ENSMEUP00000004271	Drosha ribonuclease III.	Mitochondrial ribosomal protein L27.	0.943
DROSHA	RPS11	ENSMEUP00000001884	ENSMEUP00000007891	Drosha ribonuclease III.	Ribosomal protein S11.	0.819
ENSMEUP00000002155	DDX6	ENSMEUP00000002155	ENSMEUP00000009627	annotation not available	DEAD-box helicase 6.	0.441
ENSMEUP00000002155	DROSHA	ENSMEUP00000002155	ENSMEUP00000001884	annotation not available	Drosha ribonuclease III.	0.912
ENSMEUP00000002155	LIN28B	ENSMEUP00000002155	ENSMEUP00000002795	annotation not available	Lin-28 homolog B.	0.628
ENSMEUP00000002155	MRPL27	ENSMEUP00000002155	ENSMEUP00000004271	annotation not available	Mitochondrial ribosomal protein L27.	0.999
ENSMEUP00000002155	RPS11	ENSMEUP00000002155	ENSMEUP00000007891	annotation not available	Ribosomal protein S11.	0.999
ENSMEUP00000004978	DDX6	ENSMEUP00000004978	ENSMEUP00000009627	annotation not available	DEAD-box helicase 6.	0.639