GPATCH3 protein (Notamacropus eugenii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GPATCH3

G-patch domain containing 3. (525 aa)

Predicted Functional Partners:

FUT8

0.786

ENSMEUP00000013550

0.701

ENSMEUP00000004278

0.692

ENSMEUP00000009588

0.692

ENSMEUP00000012495

0.691

ENSMEUP00000001160

0.674

ENSMEUP00000007181

0.674

ENSMEUP00000001287

0.665

FUT1

0.665

ENSMEUP00000011328

0.653

Your Current Organism:

Notamacropus eugenii

NCBI taxonomy Id: 9315
Other names: Macropus eugenii, N. eugenii, tammar wallaby

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMEUP00000001160	ENSMEUP00000007181	ENSMEUP00000001160	ENSMEUP00000007181	annotation not available	annotation not available	0.997
ENSMEUP00000001160	ENSMEUP00000009588	ENSMEUP00000001160	ENSMEUP00000009588	annotation not available	annotation not available	0.400
ENSMEUP00000001160	ENSMEUP00000011328	ENSMEUP00000001160	ENSMEUP00000011328	annotation not available	annotation not available	0.595
ENSMEUP00000001160	ENSMEUP00000013550	ENSMEUP00000001160	ENSMEUP00000013550	annotation not available	annotation not available	0.926
ENSMEUP00000001160	FUT8	ENSMEUP00000001160	ENSMEUP00000005414	annotation not available	Fucosyltransferase 8.	0.498
ENSMEUP00000001160	GPATCH3	ENSMEUP00000001160	ENSMEUP00000002952	annotation not available	G-patch domain containing 3.	0.674
ENSMEUP00000001287	ENSMEUP00000004278	ENSMEUP00000001287	ENSMEUP00000004278	annotation not available	annotation not available	0.874
ENSMEUP00000001287	ENSMEUP00000009588	ENSMEUP00000001287	ENSMEUP00000009588	annotation not available	annotation not available	0.881
ENSMEUP00000001287	ENSMEUP00000012495	ENSMEUP00000001287	ENSMEUP00000012495	annotation not available	annotation not available	0.873
ENSMEUP00000001287	FUT8	ENSMEUP00000001287	ENSMEUP00000005414	annotation not available	Fucosyltransferase 8.	0.417
ENSMEUP00000001287	GPATCH3	ENSMEUP00000001287	ENSMEUP00000002952	annotation not available	G-patch domain containing 3.	0.665
ENSMEUP00000004278	ENSMEUP00000001287	ENSMEUP00000004278	ENSMEUP00000001287	annotation not available	annotation not available	0.874
ENSMEUP00000004278	ENSMEUP00000011328	ENSMEUP00000004278	ENSMEUP00000011328	annotation not available	annotation not available	0.871
ENSMEUP00000004278	FUT1	ENSMEUP00000004278	ENSMEUP00000013930	annotation not available	Fucosyltransferase 1 (H blood group).	0.874
ENSMEUP00000004278	FUT8	ENSMEUP00000004278	ENSMEUP00000005414	annotation not available	Fucosyltransferase 8.	0.508
ENSMEUP00000004278	GPATCH3	ENSMEUP00000004278	ENSMEUP00000002952	annotation not available	G-patch domain containing 3.	0.692
ENSMEUP00000007181	ENSMEUP00000001160	ENSMEUP00000007181	ENSMEUP00000001160	annotation not available	annotation not available	0.997
ENSMEUP00000007181	ENSMEUP00000009588	ENSMEUP00000007181	ENSMEUP00000009588	annotation not available	annotation not available	0.518
ENSMEUP00000007181	ENSMEUP00000011328	ENSMEUP00000007181	ENSMEUP00000011328	annotation not available	annotation not available	0.595
ENSMEUP00000007181	ENSMEUP00000013550	ENSMEUP00000007181	ENSMEUP00000013550	annotation not available	annotation not available	0.926