SNRPD3 protein (Notamacropus eugenii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SNRPD3

Small nuclear ribonucleoprotein D3 polypeptide. (126 aa)

Predicted Functional Partners:

SNRPF

0.999

ENSMEUP00000004978

0.999

LSM10

0.999

SNRPD2

0.999

ENSMEUP00000013931

0.999

ENSMEUP00000008972

0.998

SNRPA1

0.998

EFTUD2

0.998

PRPF8

0.998

SNRNP70

0.997

Your Current Organism:

Notamacropus eugenii

NCBI taxonomy Id: 9315
Other names: Macropus eugenii, N. eugenii, tammar wallaby

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFTUD2	ENSMEUP00000004978	ENSMEUP00000014276	ENSMEUP00000004978	Elongation factor Tu GTP binding domain containing 2.	annotation not available	0.997
EFTUD2	ENSMEUP00000008972	ENSMEUP00000014276	ENSMEUP00000008972	Elongation factor Tu GTP binding domain containing 2.	annotation not available	0.999
EFTUD2	ENSMEUP00000013931	ENSMEUP00000014276	ENSMEUP00000013931	Elongation factor Tu GTP binding domain containing 2.	annotation not available	0.998
EFTUD2	LSM10	ENSMEUP00000014276	ENSMEUP00000005755	Elongation factor Tu GTP binding domain containing 2.	LSM10, U7 small nuclear RNA associated.	0.998
EFTUD2	PRPF8	ENSMEUP00000014276	ENSMEUP00000014641	Elongation factor Tu GTP binding domain containing 2.	pre-mRNA processing factor 8.	0.999
EFTUD2	SNRNP70	ENSMEUP00000014276	ENSMEUP00000014287	Elongation factor Tu GTP binding domain containing 2.	Small nuclear ribonucleoprotein U1 subunit 70.	0.907
EFTUD2	SNRPA1	ENSMEUP00000014276	ENSMEUP00000011830	Elongation factor Tu GTP binding domain containing 2.	Small nuclear ribonucleoprotein polypeptide A.	0.993
EFTUD2	SNRPD2	ENSMEUP00000014276	ENSMEUP00000010950	Elongation factor Tu GTP binding domain containing 2.	Small nuclear ribonucleoprotein D2 polypeptide.	0.997
EFTUD2	SNRPD3	ENSMEUP00000014276	ENSMEUP00000003439	Elongation factor Tu GTP binding domain containing 2.	Small nuclear ribonucleoprotein D3 polypeptide.	0.998
EFTUD2	SNRPF	ENSMEUP00000014276	ENSMEUP00000000618	Elongation factor Tu GTP binding domain containing 2.	Small nuclear ribonucleoprotein polypeptide F.	0.998
ENSMEUP00000004978	EFTUD2	ENSMEUP00000004978	ENSMEUP00000014276	annotation not available	Elongation factor Tu GTP binding domain containing 2.	0.997
ENSMEUP00000004978	ENSMEUP00000008972	ENSMEUP00000004978	ENSMEUP00000008972	annotation not available	annotation not available	0.995
ENSMEUP00000004978	ENSMEUP00000013931	ENSMEUP00000004978	ENSMEUP00000013931	annotation not available	annotation not available	0.999
ENSMEUP00000004978	LSM10	ENSMEUP00000004978	ENSMEUP00000005755	annotation not available	LSM10, U7 small nuclear RNA associated.	0.999
ENSMEUP00000004978	PRPF8	ENSMEUP00000004978	ENSMEUP00000014641	annotation not available	pre-mRNA processing factor 8.	0.997
ENSMEUP00000004978	SNRNP70	ENSMEUP00000004978	ENSMEUP00000014287	annotation not available	Small nuclear ribonucleoprotein U1 subunit 70.	0.998
ENSMEUP00000004978	SNRPA1	ENSMEUP00000004978	ENSMEUP00000011830	annotation not available	Small nuclear ribonucleoprotein polypeptide A.	0.997
ENSMEUP00000004978	SNRPD2	ENSMEUP00000004978	ENSMEUP00000010950	annotation not available	Small nuclear ribonucleoprotein D2 polypeptide.	0.999
ENSMEUP00000004978	SNRPD3	ENSMEUP00000004978	ENSMEUP00000003439	annotation not available	Small nuclear ribonucleoprotein D3 polypeptide.	0.999
ENSMEUP00000004978	SNRPF	ENSMEUP00000004978	ENSMEUP00000000618	annotation not available	Small nuclear ribonucleoprotein polypeptide F.	0.999