Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
POLLDNA polymerase lambda. (575 aa)    
Predicted Functional Partners:
PCNA
Proliferating cell nuclear antigen.
    
 0.977
XRCC5
X-ray repair cross complementing 5.
    
 0.971
PRKDC
Protein kinase, DNA-activated, catalytic subunit.
    
 0.968
LIG3
DNA ligase 3.
   
 0.925
PNKP
Polynucleotide kinase 3'-phosphatase.
    
 0.914
ENSMEUP00000008512
annotation not available
  
 
 0.880
ENSMEUP00000008648
annotation not available
    
 
 0.855
ENSMEUP00000011576
annotation not available
  
 0.854
TDP1
tyrosyl-DNA phosphodiesterase 1.
    
 
 0.844
APEX1
Apurinic/apyrimidinic endodeoxyribonuclease 1.
    
 0.838
Your Current Organism:
Notamacropus eugenii
NCBI taxonomy Id: 9315
Other names: Macropus eugenii, N. eugenii, tammar wallaby
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