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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF39pre-mRNA processing factor 39. (668 aa)    
Predicted Functional Partners:
TRNAU1AP
tRNA selenocysteine 1 associated protein 1.
   
 
 0.976
SNRNP70
Small nuclear ribonucleoprotein U1 subunit 70.
   
 
 0.966
RBM25
RNA binding motif protein 25.
   
 
 0.962
SNRPC
Small nuclear ribonucleoprotein polypeptide C.
   
 
 0.957
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
    
 
 0.957
ENSMEUP00000014489
annotation not available
   
 
 0.928
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
 
 0.902
LSM10
LSM10, U7 small nuclear RNA associated.
    
 
 0.901
ENSMEUP00000011215
annotation not available
   
   0.899
ENSMEUP00000014209
annotation not available
   
   0.899
Your Current Organism:
Notamacropus eugenii
NCBI taxonomy Id: 9315
Other names: Macropus eugenii, N. eugenii, tammar wallaby
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.