STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHB57734.1PFAM: Alanine racemase, N-terminal; KEGG: mkm:Mkms_4845 hypothetical protein. (426 aa)    
Predicted Functional Partners:
ilvA
Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. Belongs to the serine/threonine dehydratas [...]
    
 0.757
EHB56326.1
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: msm:MSMEG_1417 glyoxalase family protein.
   
 
  0.748
EHB58403.1
PFAM: Short-chain dehydrogenase/reductase SDR; Male sterility, NAD-binding; KEGG: mav:MAV_4340 short chain dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR.
     
 0.641
lysS
PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: Lysyl-tRNA synthetase, class II; HAMAP: Lysyl-tRNA synthetase, class II; KEGG: mva:Mvan_5360 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
     0.625
purD
Phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; TIGRFAM: Phosphoribosylglycinamide synthetase; HAMAP: Phosphoribosylglycinamide synthetase; KEGG: mjl:Mjls_4954 phosphoribosylamine--glycine ligase; Belongs to the GARS family.
    
  0.577
EHB58093.1
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mmi:MMAR_4645 hypothetical protein.
  
  
  0.557
EHB58506.1
PFAM: Amidohydrolase 1; KEGG: fri:FraEuI1c_1986 D-aminoacylase domain protein.
 
   
 0.557
EHB58787.1
D-aminoacylase domain protein; PFAM: D-aminoacylase, C-terminal; Amidohydrolase 3; KEGG: fri:FraEuI1c_3155 D-aminoacylase domain protein.
 
   
 0.551
EHB58353.1
Sarcosine dehydrogenase; KEGG: mva:Mvan_2290 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel; Belongs to the GcvT family.
  
  
 0.550
EHB57775.1
KEGG: mbt:JTY_3630 aspartate aminotransferase; PFAM: Aminotransferase, class I/classII.
    
  0.536
Your Current Organism:
Mycolicibacterium rhodesiae JS60
NCBI taxonomy Id: 931627
Other names: M. rhodesiae JS60, Mycobacterium rhodesiae JS60
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