STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHB56078.1PFAM: Domain of unknown function DUF305; KEGG: mva:Mvan_0174 hypothetical protein. (201 aa)    
Predicted Functional Partners:
EHB56079.1
Aminopeptidase Y; KEGG: mjl:Mjls_0543 aminopeptidase Y; PFAM: Peptidase M28; Protease-associated domain, PA.
       0.773
EHB56081.1
PFAM: Cation efflux protein; KEGG: rha:RHA1_ro04248 hypothetical protein.
 
   
 0.547
EHB56080.1
Regulatory protein ArsR; KEGG: rop:ROP_26020 putative ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR.
 
     0.535
Your Current Organism:
Mycolicibacterium rhodesiae JS60
NCBI taxonomy Id: 931627
Other names: M. rhodesiae JS60, Mycobacterium rhodesiae JS60
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.