STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHB56233.1KEGG: mjl:Mjls_0914 putative protein UsfY. (104 aa)    
Predicted Functional Partners:
EHB55243.1
KEGG: mjl:Mjls_0351 hypothetical protein.
  
  
 0.758
EHB58526.1
TIGRFAM: L-lysine 6-transaminase; KEGG: msm:MSMEG_1764 L-lysine aminotransferase; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
    0.484
EHB58104.1
Alanine--glyoxylate transaminase; KEGG: msm:MSMEG_0782 aminotransferase class-III; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
    0.472
EHB53409.1
Alanine--glyoxylate transaminase; KEGG: scb:SCAB_3821 putative aminotransferase; PFAM: Aminotransferase class-III; Aminoglycoside phosphotransferase.
   
    0.472
EHB50246.1
Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS; PFAM: Sporulation stage II, protein E C-terminal; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; Signal transduction response regulator, receiver domain; KEGG: mva:Mvan_1931 multi-sensor signal transduction histidine kinase; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Protein phosphatase 2C-like.
  
  
 0.472
EHB50366.1
TIGRFAM: 4-aminobutyrate aminotransferase, bacterial; KEGG: mmi:MMAR_2118 4-aminobutyrate aminotransferase; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
    0.472
EHB47806.1
Acetylornithine transaminase; KEGG: mva:Mvan_1823 hypothetical protein; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
    0.472
EHB58724.1
KEGG: kra:Krad_0121 putative PAS/PAC sensor protein.
  
  
 0.470
EHB50269.1
PFAM: ATPase-like, ATP-binding domain; KEGG: mjl:Mjls_2743 putative anti-sigma regulatory factor, serine/threonine protein kinase.
  
  
 0.470
EHB58532.1
KEGG: mav:MAV_4258 RsbW protein.
  
  
 0.459
Your Current Organism:
Mycolicibacterium rhodesiae JS60
NCBI taxonomy Id: 931627
Other names: M. rhodesiae JS60, Mycobacterium rhodesiae JS60
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