Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yedY_4Oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (411 aa)    
Predicted Functional Partners:
soxA
SoxA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.966
AKH72162.1
Sulfite:cytochrome C oxidoreductase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.966
AKH72143.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.963
AKH72139.1
SoxX protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.956
soxY
Tat pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.948
yfkN
5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family.
 
  
 0.945
soxZ
SoxZ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.942
yedY_3
Molybdopterin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.924
sseA
3-mercaptopyruvate sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.913
cysI
Sulfite reductase; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
   
 
 0.912
Your Current Organism:
Pandoraea apista
NCBI taxonomy Id: 93218
Other names: ATCC BAA-61, CCUG 38412, CIP 106627, DSM 16535, LMG 16407, LMG:16407, NCTC 13158, P. apista, Pandoraea apista Coenye et al. 2000
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