Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKH72162.1Sulfite:cytochrome C oxidoreductase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa)    
Predicted Functional Partners:
yedY_4
Oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.966
AKH72139.1
SoxX protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.636
yedY_3
Molybdopterin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.553
AKH73805.1
40-residue YVTN family beta-propeller repeat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.524
AKH74019.1
40-residue YVTN family beta-propeller repeat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.524
putA
Transcriptional regulator; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
       0.485
rcnA
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NiCoT transporter (TC 2.A.52) family.
  
     0.476
yedY_1
Molybdopterin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.464
AKH73637.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.459
AKH74811.1
Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.446
Your Current Organism:
Pandoraea apista
NCBI taxonomy Id: 93218
Other names: ATCC BAA-61, CCUG 38412, CIP 106627, DSM 16535, LMG 16407, LMG:16407, NCTC 13158, P. apista, Pandoraea apista Coenye et al. 2000
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