STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
apc3_2Hydantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (673 aa)    
Predicted Functional Partners:
apc4_1
Methylhydantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
apc4_2
Hydantoin utilization protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
apc3_3
Hydantoin utilization protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.915
atzC_1
Cytosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.900
atzC_2
Cytosine deaminase; Catalyzes the deamination of cytosine to uracil and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.900
codA
N-acyl-D-amino acid deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.900
apc3_1
5-oxoprolinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.703
AKH72345.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.694
pcaR_2
IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.470
rutB
Cysteine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.422
Your Current Organism:
Pandoraea apista
NCBI taxonomy Id: 93218
Other names: ATCC BAA-61, CCUG 38412, CIP 106627, DSM 16535, LMG 16407, LMG:16407, NCTC 13158, P. apista, Pandoraea apista Coenye et al. 2000
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