STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKH75414.1Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)    
Predicted Functional Partners:
AKH73987.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.881
AKH73920.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.617
tyrA
Prephenate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.577
prs_1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.572
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.567
AKH75496.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.497
AKH74307.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.482
AKH75413.1
2-nitropropane dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.478
AKH73986.1
2-nitropropane dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.462
topB_2
DNA topoisomerase III; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.446
Your Current Organism:
Pandoraea apista
NCBI taxonomy Id: 93218
Other names: ATCC BAA-61, CCUG 38412, CIP 106627, DSM 16535, LMG 16407, LMG:16407, NCTC 13158, P. apista, Pandoraea apista Coenye et al. 2000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.