STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALS63303.1Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)    
Predicted Functional Partners:
ALS58970.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.718
ALS58971.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.714
ALS58972.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.564
ALS58925.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.561
fabG-3
3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.526
ALS63397.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.479
ALS63554.1
Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.459
ALS62687.1
Lipocalin-like domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.435
ALS58969.1
DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.420
ALS60817.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.401
Your Current Organism:
Pandoraea norimbergensis
NCBI taxonomy Id: 93219
Other names: ATCC BAA-65, Burkholderia norimbergensis, CCUG 39188, CFBP 4792, CIP 105463, DSM 11628, JCM 10565, LMG 18379, LMG:18379, NCTC 13162, P. norimbergensis, strain R2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.