Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
csiR_7 | lutR_3 | A6P55_14640 | A6P55_03075 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.542 |
csiR_7 | lutR_7 | A6P55_14640 | A6P55_18415 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.650 |
csiR_7 | prmB | A6P55_14640 | A6P55_21845 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribosomal protein L3 N(5)-glutamine methyltransferase; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily. | 0.402 |
csiR_7 | ydfH_7 | A6P55_14640 | A6P55_14490 | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | Phosphonate utilization associated transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.757 |
lutR_3 | csiR_7 | A6P55_03075 | A6P55_14640 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.542 |
lutR_3 | ydfH_7 | A6P55_03075 | A6P55_14490 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Phosphonate utilization associated transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.736 |
lutR_7 | csiR_7 | A6P55_18415 | A6P55_14640 | GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.650 |
lutR_7 | ydfH_7 | A6P55_18415 | A6P55_14490 | GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | Phosphonate utilization associated transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.773 |
phnA | ydfH_7 | A6P55_14495 | A6P55_14490 | Phosphonoacetate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Phosphonate utilization associated transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.511 |
prmB | csiR_7 | A6P55_21845 | A6P55_14640 | Ribosomal protein L3 N(5)-glutamine methyltransferase; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily. | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.402 |
prmB | ydfH_7 | A6P55_21845 | A6P55_14490 | Ribosomal protein L3 N(5)-glutamine methyltransferase; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily. | Phosphonate utilization associated transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.402 |
ydfH_7 | csiR_7 | A6P55_14490 | A6P55_14640 | Phosphonate utilization associated transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.757 |
ydfH_7 | lutR_3 | A6P55_14490 | A6P55_03075 | Phosphonate utilization associated transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.736 |
ydfH_7 | lutR_7 | A6P55_14490 | A6P55_18415 | Phosphonate utilization associated transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.773 |
ydfH_7 | phnA | A6P55_14490 | A6P55_14495 | Phosphonate utilization associated transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | Phosphonoacetate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.511 |
ydfH_7 | prmB | A6P55_14490 | A6P55_21845 | Phosphonate utilization associated transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribosomal protein L3 N(5)-glutamine methyltransferase; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily. | 0.402 |