STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
alcAllantoicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the allantoicase family. (340 aa)    
Predicted Functional Partners:
allA_1
Ureidoglycolate hydrolase; Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source.
 
 0.993
AJC22212.1
Allantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.938
ureC
Urease subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.909
ureB
Urease subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the urease beta subunit family.
    
  0.909
ureA
Urease subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the urease gamma subunit family.
    
  0.909
ylbA
(S)-ureidoglycine aminohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.908
alc-2
Allantoicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the allantoicase family.
  
  
 
0.900
AJC22215.1
Ureidoglycolate hydrolase; Catalyzes the formation of glyoxylate from (S)-ureidoglycolate; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.847
pucM
Hydroxyisourate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
  
 0.555
dctA_2
C4-dicarboxylate transporter DctA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
   
   0.552
Your Current Organism:
Pandoraea pulmonicola
NCBI taxonomy Id: 93221
Other names: ATCC BAA-62, ATCC:BAA:62, CCUG 38759, CIP 106625, DSM 16583, LMG 18106, LMG:18106, NCTC 13159, P. pulmonicola, Pandoraea pulmonicola Coenye et al. 2000
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