STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJC19452.1Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)    
Predicted Functional Partners:
nfdA
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.683
AJC21309.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.677
ycaC_1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.612
APD13628.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.583
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
    0.573
ycaC_2
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.554
AJC19922.1
Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.538
AJC21310.1
DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.474
AJC19453.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.448
AJC23550.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.416
Your Current Organism:
Pandoraea pulmonicola
NCBI taxonomy Id: 93221
Other names: ATCC BAA-62, ATCC:BAA:62, CCUG 38759, CIP 106625, DSM 16583, LMG 18106, LMG:18106, NCTC 13159, P. pulmonicola, Pandoraea pulmonicola Coenye et al. 2000
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