STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dppA_3ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (522 aa)    
Predicted Functional Partners:
gsiD_6
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.940
dppB_4
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.932
AJC19578.1
palmitoyl-CoA hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.917
AJC19579.1
CMD domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.916
gsiA_13
Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
 
 0.898
AJC19580.1
Alkylhydroperoxidase; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
    0.865
gsiA_14
Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
 
 0.862
gsiC_1
Glutathione ABC transporter permease GsiC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.832
gsiD_1
Glutathione ABC transporter permease GsiD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.826
gsiC_3
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.822
Your Current Organism:
Pandoraea pulmonicola
NCBI taxonomy Id: 93221
Other names: ATCC BAA-62, ATCC:BAA:62, CCUG 38759, CIP 106625, DSM 16583, LMG 18106, LMG:18106, NCTC 13159, P. pulmonicola, Pandoraea pulmonicola Coenye et al. 2000
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