ssuC_8 protein (Pandoraea pulmonicola) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ssuC_8

ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)

Predicted Functional Partners:

cmpD_6

0.949

cmpD_4

0.931

AJC19781.1

0.911

tauA_1

0.880

cmpD_8

0.831

cmpD_1

0.821

cmpD_7

0.816

ssuB_2

0.816

ssuB_3

0.808

cmpD_3

0.778

Your Current Organism:

Pandoraea pulmonicola

NCBI taxonomy Id: 93221
Other names: ATCC BAA-62, ATCC:BAA:62, CCUG 38759, CIP 106625, DSM 16583, LMG 18106, LMG:18106, NCTC 13159, P. pulmonicola, Pandoraea pulmonicola Coenye et al. 2000

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJC19781.1	cmpD_1	RO07_03490	RO07_18595	Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
AJC19781.1	cmpD_3	RO07_03490	RO07_12290	Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
AJC19781.1	cmpD_6	RO07_03490	RO07_03480	Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
AJC19781.1	cmpD_7	RO07_03490	RO07_02195	Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
AJC19781.1	cmpD_8	RO07_03490	RO07_01390	Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.495
AJC19781.1	ssuB_2	RO07_03490	RO07_10815	Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
AJC19781.1	ssuB_3	RO07_03490	RO07_07845	Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.494
AJC19781.1	ssuC_8	RO07_03490	RO07_03485	Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
cmpD_1	AJC19781.1	RO07_18595	RO07_03490	Mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
cmpD_1	ssuC_8	RO07_18595	RO07_03485	Mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
cmpD_3	AJC19781.1	RO07_12290	RO07_03490	Nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
cmpD_3	ssuC_8	RO07_12290	RO07_03485	Nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
cmpD_4	ssuC_8	RO07_12160	RO07_03485	Nitrate ABC transporter ATP-binding protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
cmpD_4	tauA_1	RO07_12160	RO07_12165	Nitrate ABC transporter ATP-binding protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family.	Taurine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
cmpD_6	AJC19781.1	RO07_03480	RO07_03490	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
cmpD_6	ssuC_8	RO07_03480	RO07_03485	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
cmpD_6	tauA_1	RO07_03480	RO07_12165	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Taurine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.407
cmpD_7	AJC19781.1	RO07_02195	RO07_03490	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
cmpD_7	ssuC_8	RO07_02195	RO07_03485	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.816
cmpD_8	AJC19781.1	RO07_01390	RO07_03490	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.495

page 1 of 2

Server load: low (38%) [HD]

Permalink

Network

Neighborhood

Databases

Cooccurrence

Textmining

Coexpression

Experiments

Fusion

© STRING Consortium 2025

Credits

Access

Info

About