Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AJC20481.1 | gcvA_10 | RO07_08335 | RO07_08325 | Peptidase M38; Derived by automated computational analysis using gene prediction method: Protein Homology. | LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. | 0.441 |
AJC20481.1 | proP_4 | RO07_08335 | RO07_08330 | Peptidase M38; Derived by automated computational analysis using gene prediction method: Protein Homology. | MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.607 |
gcvA_10 | AJC20481.1 | RO07_08325 | RO07_08335 | LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. | Peptidase M38; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.441 |
gcvA_10 | proP_4 | RO07_08325 | RO07_08330 | LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. | MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.445 |
proP_4 | AJC20481.1 | RO07_08330 | RO07_08335 | MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | Peptidase M38; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.607 |
proP_4 | gcvA_10 | RO07_08330 | RO07_08325 | MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. | 0.445 |
proP_4 | ribE | RO07_08330 | RO07_19160 | MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | Riboflavin synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.544 |
proP_4 | rpmE2 | RO07_08330 | RO07_23575 | MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL31 family. | 0.671 |
ribE | proP_4 | RO07_19160 | RO07_08330 | Riboflavin synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. | MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.544 |
ribE | rpmE2 | RO07_19160 | RO07_23575 | Riboflavin synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL31 family. | 0.833 |
rpmE2 | proP_4 | RO07_23575 | RO07_08330 | 50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL31 family. | MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.671 |
rpmE2 | ribE | RO07_23575 | RO07_19160 | 50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL31 family. | Riboflavin synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.833 |