STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJC20551.1AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (78 aa)    
Predicted Functional Partners:
vapC
Twitching motility protein PilT; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
 
 0.993
fitB
Recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.887
AJC21195.1
Ribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.808
AJC23178.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.605
AJC19477.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.563
chpB
Toxin of the ChpB-ChpS toxin-antitoxin system; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.488
AJC23101.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.468
mdlC
Benzoylformate decarboxylase; Catalyzes the formation of benzaldehyde from benzoylformate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family.
  
     0.426
uvrA_2
Excinuclease ABC subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.424
APD13790.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.415
Your Current Organism:
Pandoraea pulmonicola
NCBI taxonomy Id: 93221
Other names: ATCC BAA-62, ATCC:BAA:62, CCUG 38759, CIP 106625, DSM 16583, LMG 18106, LMG:18106, NCTC 13159, P. pulmonicola, Pandoraea pulmonicola Coenye et al. 2000
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