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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJC20875.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (67 aa)    
Predicted Functional Partners:
AJC20876.2
Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.902
AJC23243.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.865
ctaA
Cytochrome C oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.854
cc4
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.740
AJC20873.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.723
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
     0.657
AJC21852.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.651
AJC20844.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.644
ctaE_1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.587
AJC21762.1
Protein TolA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.572
Your Current Organism:
Pandoraea pulmonicola
NCBI taxonomy Id: 93221
Other names: ATCC BAA-62, ATCC:BAA:62, CCUG 38759, CIP 106625, DSM 16583, LMG 18106, LMG:18106, NCTC 13159, P. pulmonicola, Pandoraea pulmonicola Coenye et al. 2000
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