STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJC21184.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (85 aa)    
Predicted Functional Partners:
bfr_2
Bacterioferritin; Iron-storage protein.
 
 
 0.906
AJC21183.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.823
bfr_1
Bacterioferritin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.804
exbD_3
Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.720
tolQ_3
Biopolymer transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.702
RO07_08520
Membrane protein insertion efficiency factor YidD; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
     0.647
AJC22431.1
Thiol oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.628
AJC20634.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.597
AJC19642.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.581
AJC21762.1
Protein TolA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.577
Your Current Organism:
Pandoraea pulmonicola
NCBI taxonomy Id: 93221
Other names: ATCC BAA-62, ATCC:BAA:62, CCUG 38759, CIP 106625, DSM 16583, LMG 18106, LMG:18106, NCTC 13159, P. pulmonicola, Pandoraea pulmonicola Coenye et al. 2000
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