STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yerAHypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (121 aa)    
Predicted Functional Partners:
sicA_1
CesD/SycD/LcrH family type III secretion system chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.812
sseC
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
    0.779
prgK_2
EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.624
prgK_3
EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.624
ssaV
EscV/YscV/HrcV family type III secretion system export apparatus protein; With SsaC forms part of a protein export system across the inner and outer cell membranes; part of the Salmonella pathogenicity island 2; part of the type III secretion system; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.575
invA_1
EscV/YscV/HrcV family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.575
invA_2
EscV/YscV/HrcV family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.575
fliP_4
EscR/YscR/HrcR family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.571
fliQ_4
EscS/YscS/HrcS family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.519
fliQ_2
EscS/YscS/HrcS family type III secretion system export apparatus protein; Involved in the surface presentation of antigens needed for the invasion of Salmonella into host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.519
Your Current Organism:
Pandoraea pulmonicola
NCBI taxonomy Id: 93221
Other names: ATCC BAA-62, ATCC:BAA:62, CCUG 38759, CIP 106625, DSM 16583, LMG 18106, LMG:18106, NCTC 13159, P. pulmonicola, Pandoraea pulmonicola Coenye et al. 2000
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