Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sipBHypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (444 aa)    
Predicted Functional Partners:
bipB
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 
0.900
bipD
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.888
sicA_2
CesD/SycD/LcrH family type III secretion system chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.863
prgH_1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.776
prgH_2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.776
amiC_3
N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.707
sicA_1
CesD/SycD/LcrH family type III secretion system chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.679
prgI
EscF/YscF/HrpA family type III secretion system needle major subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.650
AJC21260.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.565
spaK_2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.474
Your Current Organism:
Pandoraea pulmonicola
NCBI taxonomy Id: 93221
Other names: ATCC BAA-62, ATCC:BAA:62, CCUG 38759, CIP 106625, DSM 16583, LMG 18106, LMG:18106, NCTC 13159, P. pulmonicola, Pandoraea pulmonicola Coenye et al. 2000
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