STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJC21647.1Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)    
Predicted Functional Partners:
AJC21649.1
CDP-alcohol phosphatidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.920
AJC21652.1
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.800
AJC23398.1
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.781
aldHT
Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family.
 
  
 0.655
AJC21434.1
Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.603
AJC22757.1
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.550
APD13267.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.514
AJC19508.1
Peptidase M29; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.490
fabG_4
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.460
naiP_3
MFS transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.455
Your Current Organism:
Pandoraea pulmonicola
NCBI taxonomy Id: 93221
Other names: ATCC BAA-62, ATCC:BAA:62, CCUG 38759, CIP 106625, DSM 16583, LMG 18106, LMG:18106, NCTC 13159, P. pulmonicola, Pandoraea pulmonicola Coenye et al. 2000
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