STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
arnA_2Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (347 aa)    
Predicted Functional Partners:
arnA_1
Formyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.995
arnC_1
UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.964
arnB_1
Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.939
arnD
Chitin deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.905
AJC23488.1
4-amino-4-deoxy-L-arabinose transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.881
arnT_2
4-amino-4-deoxy-L-arabinose transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.880
arnT_1
4-amino-4-deoxy-L-arabinose transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.825
rpsS
30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.717
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
    
 0.717
rpsC
30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
  0.665
Your Current Organism:
Pandoraea pulmonicola
NCBI taxonomy Id: 93221
Other names: ATCC BAA-62, ATCC:BAA:62, CCUG 38759, CIP 106625, DSM 16583, LMG 18106, LMG:18106, NCTC 13159, P. pulmonicola, Pandoraea pulmonicola Coenye et al. 2000
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