Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mepA_1MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (456 aa)    
Predicted Functional Partners:
gap
Type I glyceraldehyde-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.699
rpsA
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.682
crtM_2
Squalene synthase HpnC; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.619
crtM_1
Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.619
crtM_3
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.619
AJC22288.2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.595
mepA_2
Multidrug transporter MatE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.506
rpfC
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.491
rplO
50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
   0.480
AJC22837.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.464
Your Current Organism:
Pandoraea pulmonicola
NCBI taxonomy Id: 93221
Other names: ATCC BAA-62, ATCC:BAA:62, CCUG 38759, CIP 106625, DSM 16583, LMG 18106, LMG:18106, NCTC 13159, P. pulmonicola, Pandoraea pulmonicola Coenye et al. 2000
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