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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ssuB_4ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)    
Predicted Functional Partners:
ssuC_10
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.890
ssuC_6
Sulfonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.734
cmpB_1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.706
tauA_2
Taurine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.699
ssuC_5
Taurine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.690
cmpB_4
Sulfonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.667
ssuC_4
Nitrate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.663
ssuC_8
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.659
atpD
F0F1 ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.638
rsmA
16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.630
Your Current Organism:
Pandoraea pulmonicola
NCBI taxonomy Id: 93221
Other names: ATCC BAA-62, ATCC:BAA:62, CCUG 38759, CIP 106625, DSM 16583, LMG 18106, LMG:18106, NCTC 13159, P. pulmonicola, Pandoraea pulmonicola Coenye et al. 2000
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