Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AJC22775.1FAD/NAD(P)-binding oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (477 aa)    
Predicted Functional Partners:
thiO_4
FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.995
AJC23613.2
Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.956
adiA
Lysine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.900
aruG
Arginine N-succinyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.900
argH_2
Argininosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.810
argH_1
Argininosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.810
ydcV_4
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.809
AJC19326.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.782
prxU
Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.782
ahpC
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
 
 0.782
Your Current Organism:
Pandoraea pulmonicola
NCBI taxonomy Id: 93221
Other names: ATCC BAA-62, ATCC:BAA:62, CCUG 38759, CIP 106625, DSM 16583, LMG 18106, LMG:18106, NCTC 13159, P. pulmonicola, Pandoraea pulmonicola Coenye et al. 2000
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