STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM40885.1Xylose-binding protein. (340 aa)    
Predicted Functional Partners:
SEM40855.1
D-xylose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.965
SEM40824.1
Monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-).
 
 0.933
SEM47172.1
D-xylose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.926
SEM47136.1
Monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-).
 
 0.859
SEN32593.1
Repeat domain-containing protein.
 
     0.789
SEM43115.1
Multiple monosaccharide ABC transporter membrane protein; Belongs to the binding-protein-dependent transport system permease family.
  
  
  0.729
SEM47249.1
Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.
 
     0.704
xylA
D-xylose isomerase; Belongs to the xylose isomerase family.
 
  
 0.502
SEM40916.1
2-keto-myo-inositol isomerase.
       0.468
SEM40794.1
Predicted dehydrogenase.
       0.458
Your Current Organism:
Gemmobacter aquatilis
NCBI taxonomy Id: 933059
Other names: ATCC 49971, DSM 3857, G. aquatilis
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