STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN05641.1Pilus assembly protein CpaB. (285 aa)    
Predicted Functional Partners:
SEN05678.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.988
SEN05775.1
Pilus assembly protein CpaE.
 
  
 0.988
SEN05856.1
Tight adherence protein B.
 
  
 0.983
SEN05896.1
Tight adherence protein C.
 
  
 0.979
SEN05554.1
Hypothetical protein.
 
  
 0.975
SEN06026.1
Prepilin peptidase CpaA.
 
  
 0.967
SEN76473.1
TadE-like protein.
 
  
 0.941
SEN76437.1
Putative Flp pilus-assembly TadE/G-like.
 
  
 0.911
SEN05814.1
Pilus assembly protein CpaF.
 
  
 0.910
SEN76509.1
Flp pilus assembly protein TadG.
 
  
 0.905
Your Current Organism:
Gemmobacter aquatilis
NCBI taxonomy Id: 933059
Other names: ATCC 49971, DSM 3857, G. aquatilis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.