STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN44774.1Trimethylamine---corrinoid protein Co-methyltransferase; Belongs to the trimethylamine methyltransferase family. (514 aa)    
Predicted Functional Partners:
SEN28337.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
  
 0.844
SEN28246.1
Protein of unknown function.
 
     0.786
SEO27287.1
Uncharacterized 2Fe-2 and 4Fe-4S clusters-containing protein, contains DUF4445 domain.
 
     0.786
SEO27141.1
Virulence factor.
 
     0.785
SEO27203.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
 
     0.777
SEO27171.1
Methylenetetrahydrofolate reductase (NADPH).
 
    0.754
SEN28462.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
  
     0.734
SEM79314.1
Hypothetical protein.
  
     0.605
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
       0.519
SEN09365.1
Dimethylglycine dehydrogenase; Belongs to the GcvT family.
 
     0.517
Your Current Organism:
Gemmobacter aquatilis
NCBI taxonomy Id: 933059
Other names: ATCC 49971, DSM 3857, G. aquatilis
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