SEN46653.1 protein (Gemmobacter aquatilis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEN46653.1

Amino acid/amide ABC transporter substrate-binding protein, HAAT family (TC 3.A.1.4.-). (405 aa)

Predicted Functional Partners:

SEN46616.1

0.989

SEN46562.1

0.988

SEN46484.1

0.948

SEN46523.1

0.943

SEO25434.1

0.886

SEO25400.1

0.884

SEO04240.1

0.871

SEO04274.1

0.869

SEN82485.1

0.861

SEO25466.1

0.857

Your Current Organism:

Gemmobacter aquatilis

NCBI taxonomy Id: 933059
Other names: ATCC 49971, DSM 3857, G. aquatilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEN46484.1	SEN46523.1	SAMN04488103_105144	SAMN04488103_105145	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-).	Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.	0.900
SEN46484.1	SEN46562.1	SAMN04488103_105144	SAMN04488103_105146	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-).	Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.998
SEN46484.1	SEN46616.1	SAMN04488103_105144	SAMN04488103_105147	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-).	Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.989
SEN46484.1	SEN46653.1	SAMN04488103_105144	SAMN04488103_105148	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-).	Amino acid/amide ABC transporter substrate-binding protein, HAAT family (TC 3.A.1.4.-).	0.948
SEN46484.1	SEN82485.1	SAMN04488103_105144	SAMN04488103_10862	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-).	Amino acid/amide ABC transporter membrane protein 2, HAAT family (TC 3.A.1.4.-); Belongs to the binding-protein-dependent transport system permease family.	0.982
SEN46484.1	SEO04240.1	SAMN04488103_105144	SAMN04488103_11111	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-).	Amino acid/amide ABC transporter membrane protein 2, HAAT family; Belongs to the binding-protein-dependent transport system permease family.	0.964
SEN46484.1	SEO04274.1	SAMN04488103_105144	SAMN04488103_11112	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-).	Amino acid/amide ABC transporter membrane protein 1, HAAT family; Belongs to the binding-protein-dependent transport system permease family.	0.914
SEN46484.1	SEO25400.1	SAMN04488103_105144	SAMN04488103_11719	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-).	Amino acid/amide ABC transporter membrane protein 1, HAAT family; Belongs to the binding-protein-dependent transport system permease family.	0.832
SEN46484.1	SEO25434.1	SAMN04488103_105144	SAMN04488103_11720	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-).	Amino acid/amide ABC transporter membrane protein 2, HAAT family; Belongs to the binding-protein-dependent transport system permease family.	0.795
SEN46484.1	SEO25466.1	SAMN04488103_105144	SAMN04488103_11721	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-).	Urea transport system ATP-binding protein.	0.668
SEN46523.1	SEN46484.1	SAMN04488103_105145	SAMN04488103_105144	Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-).	0.900
SEN46523.1	SEN46562.1	SAMN04488103_105145	SAMN04488103_105146	Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.	Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.999
SEN46523.1	SEN46616.1	SAMN04488103_105145	SAMN04488103_105147	Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.	Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.995
SEN46523.1	SEN46653.1	SAMN04488103_105145	SAMN04488103_105148	Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.	Amino acid/amide ABC transporter substrate-binding protein, HAAT family (TC 3.A.1.4.-).	0.943
SEN46523.1	SEN82485.1	SAMN04488103_105145	SAMN04488103_10862	Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.	Amino acid/amide ABC transporter membrane protein 2, HAAT family (TC 3.A.1.4.-); Belongs to the binding-protein-dependent transport system permease family.	0.991
SEN46523.1	SEO04240.1	SAMN04488103_105145	SAMN04488103_11111	Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.	Amino acid/amide ABC transporter membrane protein 2, HAAT family; Belongs to the binding-protein-dependent transport system permease family.	0.993
SEN46523.1	SEO04274.1	SAMN04488103_105145	SAMN04488103_11112	Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.	Amino acid/amide ABC transporter membrane protein 1, HAAT family; Belongs to the binding-protein-dependent transport system permease family.	0.938
SEN46523.1	SEO25400.1	SAMN04488103_105145	SAMN04488103_11719	Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.	Amino acid/amide ABC transporter membrane protein 1, HAAT family; Belongs to the binding-protein-dependent transport system permease family.	0.681
SEN46523.1	SEO25434.1	SAMN04488103_105145	SAMN04488103_11720	Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.	Amino acid/amide ABC transporter membrane protein 2, HAAT family; Belongs to the binding-protein-dependent transport system permease family.	0.760
SEN46562.1	SEN46484.1	SAMN04488103_105146	SAMN04488103_105144	Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-).	0.998