STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN91153.1Diadenosine tetraphosphate (Ap4A) hydrolase. (127 aa)    
Predicted Functional Partners:
SEN91126.1
Core-2/I-Branching enzyme.
  
   0.870
cysN
Adenylylsulfate kinase /sulfate adenylyltransferase subunit 1; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
    
  0.817
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
  0.773
SEM53859.1
Type III restriction enzyme.
    
  0.737
SEN91092.1
Sulfotransferase family protein.
       0.723
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
 
  0.699
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.690
SEN47487.1
Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family.
   
 
  0.567
SEN60979.1
ATP-dependent RNA helicase RhlE.
   
 
  0.567
SEN81655.1
ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.
   
 
  0.567
Your Current Organism:
Gemmobacter aquatilis
NCBI taxonomy Id: 933059
Other names: ATCC 49971, DSM 3857, G. aquatilis
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