STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO00244.1Glycine/D-amino acid oxidase. (346 aa)    
Predicted Functional Partners:
SEM90707.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 0.939
SEN30881.1
N-methylglutamate dehydrogenase subunit C; Belongs to the GcvT family.
  
 0.939
SEN76269.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 0.939
thiG
Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
  
  0.906
SEM42165.1
Glycine oxidase.
  
  
  0.879
SEO00209.1
tRNA U34 5-methylaminomethyl-2-thiouridine-forming methyltransferase MnmC.
 
     0.806
SEM60383.1
Glutamate synthase (NADPH) large subunit.
    
 0.740
SEO00172.1
EamA-like transporter family protein.
       0.694
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.656
SEN25727.1
Hypothetical protein.
  
     0.605
Your Current Organism:
Gemmobacter aquatilis
NCBI taxonomy Id: 933059
Other names: ATCC 49971, DSM 3857, G. aquatilis
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