STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO04485.1Muconate cycloisomerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (442 aa)    
Predicted Functional Partners:
SEO04062.1
Catechol 1,2-dioxygenase.
 
 
 0.940
SEO16214.1
Catechol 1,2-dioxygenase.
 
 
 0.937
SEO04412.1
Benzoate/toluate 1,2-dioxygenase beta subunit.
 
  
 0.905
SEO04450.1
Benzoate 1,2-dioxygenase, alpha subunit.
 
  
 0.900
SEO04377.1
Benzoate/toluate 1,2-dioxygenase reductase subunit.
 
  
 0.887
SEO04343.1
1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
  0.861
SEO03980.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
  
  0.660
SEO04518.1
DNA-binding transcriptional regulator, MarR family.
 
     0.623
SEO04313.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
 
     0.564
SEO04205.1
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.
 
     0.511
Your Current Organism:
Gemmobacter aquatilis
NCBI taxonomy Id: 933059
Other names: ATCC 49971, DSM 3857, G. aquatilis
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