A0A067PRN1 protein (Jaapia argillacea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A067PRN1

C2H2-type domain-containing protein. (331 aa)

Predicted Functional Partners:

A0A067PG50

0.741

A0A067PVP5

0.735

A0A067QDB6

0.735

A0A067QAS2

0.723

A0A067PLY4

0.716

A0A067QCX4

0.714

A0A067QPW1

0.708

A0A067QB55

0.706

A0A067PID4

0.699

A0A067PSU4

0.699

Your Current Organism:

Jaapia argillacea

NCBI taxonomy Id: 933084
Other names: J. argillacea MUCL 33604, Jaapia argillacea MUCL 33604

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A067PG50	A0A067PRN1	Uncharacterized protein.	C2H2-type domain-containing protein.	0.741
A0A067PG50	A0A067QAS2	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.855
A0A067PG50	A0A067QPW1	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A067PID4	A0A067PRN1	Uncharacterized protein.	C2H2-type domain-containing protein.	0.699
A0A067PID4	A0A067PSU4	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.999
A0A067PID4	A0A067QCX4	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A067PLY4	A0A067PRN1	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	C2H2-type domain-containing protein.	0.716
A0A067PLY4	A0A067QB55	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Uncharacterized protein.	0.803
A0A067PRN1	A0A067PG50	C2H2-type domain-containing protein.	Uncharacterized protein.	0.741
A0A067PRN1	A0A067PID4	C2H2-type domain-containing protein.	Uncharacterized protein.	0.699
A0A067PRN1	A0A067PLY4	C2H2-type domain-containing protein.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.716
A0A067PRN1	A0A067PSU4	C2H2-type domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.699
A0A067PRN1	A0A067PVP5	C2H2-type domain-containing protein.	RING-type domain-containing protein.	0.735
A0A067PRN1	A0A067QAS2	C2H2-type domain-containing protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.723
A0A067PRN1	A0A067QB55	C2H2-type domain-containing protein.	Uncharacterized protein.	0.706
A0A067PRN1	A0A067QCX4	C2H2-type domain-containing protein.	Uncharacterized protein.	0.714
A0A067PRN1	A0A067QDB6	C2H2-type domain-containing protein.	Uncharacterized protein.	0.735
A0A067PRN1	A0A067QPW1	C2H2-type domain-containing protein.	Uncharacterized protein.	0.708
A0A067PSU4	A0A067PID4	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein.	0.999
A0A067PSU4	A0A067PRN1	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	C2H2-type domain-containing protein.	0.699