STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDE_06546Putative alpha-L-arabinofuranosidase. (636 aa)    
Predicted Functional Partners:
PDE_07080
Putative alpha-L-arabinofuranosidase.
  
  
0.928
PDE_09988
Putative alpha-L-arabinofuranosidase.
    
 0.924
PDE_06891
Putative exopolygalacturonase; Belongs to the glycosyl hydrolase 28 family.
     
 0.902
PDE_03466
Putative rhamnogalacturonase.
     
 0.880
PDE_05897
PKS_ER domain-containing protein.
    
  0.843
PDE_04459
Putative bifunctional polygalacturonase/pectin methylesterase.
    
  0.841
PDE_08058
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 0.779
PDE_00276
Putative alpha-L-arabinofuranosidase.
  
  
 
0.756
PDE_03095
CDC73_C domain-containing protein.
    
 0.742
PDE_09892
TPR_REGION domain-containing protein.
    
 0.741
Your Current Organism:
Penicillium oxalicum
NCBI taxonomy Id: 933388
Other names: P. oxalicum 114-2, Penicillium oxalicum 114-2
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