PDE_09027 protein (Penicillium oxalicum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PDE_09027

Uncharacterized protein. (537 aa)

Predicted Functional Partners:

PDE_04497

0.492

PDE_00163

0.438

PDE_01854

0.438

PDE_04630

0.438

PDE_04789

0.438

PDE_07215

0.438

PDE_07440

0.438

PDE_07856

0.438

PDE_05884

0.438

PDE_08422

0.438

Your Current Organism:

Penicillium oxalicum

NCBI taxonomy Id: 933388
Other names: P. oxalicum 114-2, Penicillium oxalicum 114-2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PDE_00163	PDE_09027	S7Z3X5	S7ZTM6	Abhydrolase_3 domain-containing protein.	Uncharacterized protein.	0.438
PDE_01854	PDE_09027	S7Z9M5	S7ZTM6	Abhydrolase_3 domain-containing protein.	Uncharacterized protein.	0.438
PDE_04497	PDE_09027	S8B4Q2	S7ZTM6	Abhydrolase_3 domain-containing protein.	Uncharacterized protein.	0.492
PDE_04630	PDE_09027	S7ZG61	S7ZTM6	Abhydrolase_3 domain-containing protein.	Uncharacterized protein.	0.438
PDE_04789	PDE_09027	S7ZHX0	S7ZTM6	Abhydrolase_3 domain-containing protein.	Uncharacterized protein.	0.438
PDE_05884	PDE_09027	S7ZQL0	S7ZTM6	Uncharacterized protein.	Uncharacterized protein.	0.438
PDE_07215	PDE_09027	S7ZNK2	S7ZTM6	Zn(2)-C6 fungal-type domain-containing protein.	Uncharacterized protein.	0.438
PDE_07440	PDE_09027	S7ZP61	S7ZTM6	Uncharacterized protein.	Uncharacterized protein.	0.438
PDE_07856	PDE_09027	S7ZQA0	S7ZTM6	Abhydrolase_3 domain-containing protein.	Uncharacterized protein.	0.438
PDE_08422	PDE_09027	S7ZRV7	S7ZTM6	FMN_red domain-containing protein.	Uncharacterized protein.	0.438
PDE_09027	PDE_00163	S7ZTM6	S7Z3X5	Uncharacterized protein.	Abhydrolase_3 domain-containing protein.	0.438
PDE_09027	PDE_01854	S7ZTM6	S7Z9M5	Uncharacterized protein.	Abhydrolase_3 domain-containing protein.	0.438
PDE_09027	PDE_04497	S7ZTM6	S8B4Q2	Uncharacterized protein.	Abhydrolase_3 domain-containing protein.	0.492
PDE_09027	PDE_04630	S7ZTM6	S7ZG61	Uncharacterized protein.	Abhydrolase_3 domain-containing protein.	0.438
PDE_09027	PDE_04789	S7ZTM6	S7ZHX0	Uncharacterized protein.	Abhydrolase_3 domain-containing protein.	0.438
PDE_09027	PDE_05884	S7ZTM6	S7ZQL0	Uncharacterized protein.	Uncharacterized protein.	0.438
PDE_09027	PDE_07215	S7ZTM6	S7ZNK2	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.438
PDE_09027	PDE_07440	S7ZTM6	S7ZP61	Uncharacterized protein.	Uncharacterized protein.	0.438
PDE_09027	PDE_07856	S7ZTM6	S7ZQA0	Uncharacterized protein.	Abhydrolase_3 domain-containing protein.	0.438
PDE_09027	PDE_08422	S7ZTM6	S7ZRV7	Uncharacterized protein.	FMN_red domain-containing protein.	0.438