STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDE_08979Tr-type G domain-containing protein. (805 aa)    
Predicted Functional Partners:
PDE_03359
RNase_PH domain-containing protein.
    
 0.996
PDE_08699
RNase_PH domain-containing protein.
    
 0.988
PDE_05243
Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs.
   
 
 0.987
PDE_04635
Uncharacterized protein.
    
 0.986
PDE_04370
Uncharacterized protein.
   
 0.986
PDE_07321
Uncharacterized protein.
    
 0.986
PDE_01546
S1 domain-containing protein.
    
 0.986
PDE_05329
RNase_PH domain-containing protein.
    
 0.985
PDE_05412
Uncharacterized protein.
    
 0.983
PDE_08520
Uncharacterized protein; Belongs to the RNR ribonuclease family.
   
 0.983
Your Current Organism:
Penicillium oxalicum
NCBI taxonomy Id: 933388
Other names: P. oxalicum 114-2, Penicillium oxalicum 114-2
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