STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOV95675.1Pilus assembly protein PilM; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)    
Predicted Functional Partners:
pilQ
Type II secretory pathway protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.865
AOV97774.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.829
damX
Hypothetical protein; Non-essential cell division protein.
 
     0.786
AOV95676.1
Damage-inducible protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.776
AOV95677.1
Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.776
AOV95678.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.776
AOV96023.1
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.771
ompX
Virulence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.770
secM
SecA regulator SecM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.769
AOV98470.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.765
Your Current Organism:
Edwardsiella hoshinae
NCBI taxonomy Id: 93378
Other names: ATCC 33379, CIP 78.56, DSM 13771, E. hoshinae, NBRC 105699, NCTC 12121, strain 2-78
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.