STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0C2WXM9F-box domain-containing protein. (1119 aa)    
Predicted Functional Partners:
A0A0C3B846
Uncharacterized protein.
    
 0.790
A0A0C2WXY5
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.758
A0A0C3AVA7
ERCC4 domain-containing protein.
    
 0.751
A0A0C3BML4
Small nuclear ribonucleoprotein Sm D2.
    
 0.751
A0A0C2XSE0
DNA polymerase.
   
 0.747
A0A0C3BBG8
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.733
A0A0C2XX31
Sm domain-containing protein.
    
  0.730
A0A0C3B7G3
ANK_REP_REGION domain-containing protein.
   
  0.701
A0A0C3AQ36
ERCC4 domain-containing protein.
    
 0.699
A0A0C3BJX4
WD_REPEATS_REGION domain-containing protein.
   
 0.680
Your Current Organism:
Serendipita vermifera
NCBI taxonomy Id: 933852
Other names: S. vermifera MAFF 305830, Sebacina vermifera MAFF 305830, Serendipita vermifera MAFF 305830
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