STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0C2X2M9Uncharacterized protein. (142 aa)    
Predicted Functional Partners:
A0A0C3BLJ8
TRASH domain-containing protein.
   
 
 0.982
A0A0C2W4F0
RRM domain-containing protein.
   
   0.981
A0A0C3BR66
60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.
   
 
 0.977
A0A0C3BBZ4
Ribosomal_L28e domain-containing protein.
   
   0.974
A0A0C2X615
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
   
 
 0.959
A0A0C3B3J8
Brix domain-containing protein.
   
 
 0.959
A0A0C2XSG0
Uncharacterized protein.
   
 
 0.956
A0A0C2Y062
Brix domain-containing protein.
   
   0.954
A0A0C2XLX2
Uncharacterized protein.
   
   0.948
A0A0C2XVH4
C2H2-type domain-containing protein.
   
 
 0.948
Your Current Organism:
Serendipita vermifera
NCBI taxonomy Id: 933852
Other names: S. vermifera MAFF 305830, Sebacina vermifera MAFF 305830, Serendipita vermifera MAFF 305830
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