A0A0C3B146 protein (Serendipita vermifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0C3B146

Helicase ATP-binding domain-containing protein. (720 aa)

Predicted Functional Partners:

A0A0C2XME9

0.847

A0A0C3AXJ2

0.823

A0A0C2X4D7

0.797

A0A0C2X0Q1

0.772

A0A0C2X381

0.766

A0A0C3AUG2

0.727

A0A0C3BDH3

0.720

A0A0C2WR98

0.714

A0A0C2XE81

0.714

A0A0C3A633

0.714

Your Current Organism:

Serendipita vermifera

NCBI taxonomy Id: 933852
Other names: S. vermifera MAFF 305830, Sebacina vermifera MAFF 305830, Serendipita vermifera MAFF 305830

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0C2WR98	A0A0C2X0Q1	Uncharacterized protein.	RECA_2 domain-containing protein.	0.922
A0A0C2WR98	A0A0C2X381	Uncharacterized protein.	Uncharacterized protein.	0.587
A0A0C2WR98	A0A0C2X4D7	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.836
A0A0C2WR98	A0A0C2XME9	Uncharacterized protein.	Uncharacterized protein.	0.904
A0A0C2WR98	A0A0C3AUG2	Uncharacterized protein.	ATPase domain-containing protein.	0.860
A0A0C2WR98	A0A0C3B146	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.714
A0A0C2WR98	A0A0C3BDH3	Uncharacterized protein.	ZnF_Rad18 domain-containing protein.	0.694
A0A0C2X0Q1	A0A0C2WR98	RECA_2 domain-containing protein.	Uncharacterized protein.	0.922
A0A0C2X0Q1	A0A0C2X381	RECA_2 domain-containing protein.	Uncharacterized protein.	0.996
A0A0C2X0Q1	A0A0C2X4D7	RECA_2 domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.926
A0A0C2X0Q1	A0A0C2XE81	RECA_2 domain-containing protein.	Uncharacterized protein.	0.893
A0A0C2X0Q1	A0A0C2XME9	RECA_2 domain-containing protein.	Uncharacterized protein.	0.983
A0A0C2X0Q1	A0A0C3A633	RECA_2 domain-containing protein.	Uncharacterized protein.	0.893
A0A0C2X0Q1	A0A0C3AUG2	RECA_2 domain-containing protein.	ATPase domain-containing protein.	0.995
A0A0C2X0Q1	A0A0C3B146	RECA_2 domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.772
A0A0C2X0Q1	A0A0C3BDH3	RECA_2 domain-containing protein.	ZnF_Rad18 domain-containing protein.	0.813
A0A0C2X381	A0A0C2WR98	Uncharacterized protein.	Uncharacterized protein.	0.587
A0A0C2X381	A0A0C2X0Q1	Uncharacterized protein.	RECA_2 domain-containing protein.	0.996
A0A0C2X381	A0A0C2X4D7	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.976
A0A0C2X381	A0A0C2XE81	Uncharacterized protein.	Uncharacterized protein.	0.587