STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF32440.1Magnesium chelatase family protein. (511 aa)    
Predicted Functional Partners:
SFE52179.1
DNA processing protein.
 
 0.846
SFE60566.1
comF family protein.
 
  
 0.831
SFE88740.1
Competence protein ComEC.
 
  
 0.771
SFE57527.1
Putative endonuclease; Belongs to the UPF0102 family.
 
  
 0.721
ruvC
Holliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
  
   
 0.578
SFF32454.1
Imidazolonepropionase.
       0.467
SFF32429.1
tRNA pseudouridine65 synthase.
       0.451
SFE19889.1
DNA uptake protein ComE.
 
  
 0.405
Your Current Organism:
Flavobacterium xueshanense
NCBI taxonomy Id: 935223
Other names: CGMCC 1.9227, F. xueshanense, Flavobacterium sp. Sr22, Flavobacterium xueshanense Dong et al. 2012, NBRC 106479, strain Sr22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.